All functions
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AirDens()
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Air Density |
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align.met()
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align.met |
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browndog.met()
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get met data from browndog |
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build_cf_variables_table_url()
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Construct a URL to a specific version of the CF variables table XML |
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cfmet.downscale.daily()
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daily to subdaily downscaling |
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cfmet.downscale.subdaily()
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subdaily downscaling |
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cfmet.downscale.time()
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Downscale CF met data |
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check_met_input_file()
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Check a meteorology data file for compliance with the PEcAn standard |
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check_unit()
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Check that the unit of a variable in a NetCDF file is equivalent to
the expected unit. |
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closest_xy()
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closest_xy |
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col2ncvar()
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Create `ncvar` object from variable name |
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cos_solar_zenith_angle()
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Cosine of solar zenith angle |
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daygroup()
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Assign daygroup tag for a given date |
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db.site.lat.lon()
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db.site.lat.lon |
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debias.met.regression()
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debias.met.regression |
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debias.met()
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debias_met |
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download.Ameriflux()
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download.Ameriflux |
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download.AmerifluxLBL()
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Download Ameriflux LBL CSV files |
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download.CRUNCEP()
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Download CRUNCEP data |
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download.FACE()
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download.FACE |
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download.Fluxnet2015()
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download.Fluxnet2015 |
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download.FluxnetLaThuile()
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download.FluxnetLaThuile |
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download.GFDL()
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Download GFDL CMIP5 outputs for a single grid point using OPeNDAP and convert to CF |
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download.GLDAS()
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Download GLDAS data |
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download.Geostreams()
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Download Geostreams data from Clowder API |
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download.MACA()
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download.MACA |
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download.MsTMIP_NARR()
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download.MsTMIP_NARR |
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download.NARR()
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Download NARR files |
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download.NARR_site()
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Download NARR time series for a single site |
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download.NEONmet()
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Download NEON Site Met CSV files |
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download.NLDAS()
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Download NLDAS met data |
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download.NOAA_GEFS()
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Download NOAA GEFS Weather Data |
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download.PalEON()
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download.PalEON |
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download.PalEON_ENS()
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Download PalEON met ensemble files |
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download.US_WCr()
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download.US-WCr |
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equation_of_time()
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Equation of time: Eccentricity and obliquity |
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exner()
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Exner function |
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extract.local.CMIP5()
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extract.local.CMIP5 |
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extract.local.NLDAS()
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extract.local.NLDAS |
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extract.nc()
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extract.nc |
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gen.subdaily.models()
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gen.subdaily.models |
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generate_narr_url()
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Generate NARR url from a vector of dates |
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get.es()
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get es |
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get.lv()
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Latent heat of vaporization |
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get.ncvector()
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Get time series vector from netCDF file |
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get.rh()
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get RH |
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get.vpd()
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VPD |
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get_NARR_thredds()
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Retrieve NARR data using thredds |
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get_cf_variables_table()
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Retrieve the current CF variables table from cfconventions.org
and convert it into a data.frame |
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get_clowderauth()
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Authentication lookup helper |
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get_narr_url()
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Retrieve NARR data from a given URL |
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latlon2lcc()
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Convert latitude and longitude to x-y coordinates (in km) in Lambert
conformal conic projection (used by NARR) |
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latlon2narr()
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Convert latitude and longitude coordinates to NARR indices |
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lightME()
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Simulates the light macro environment |
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lm_ensemble_sims()
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lm_ensemble_sims |
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load.cfmet()
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load CF met |
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merge_met_variable()
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Merge a new met variable from an external file (e.g. CO2) into existing met files |
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met.process()
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met.process |
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met.process.stage()
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met.process.stage |
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met2CF.ALMA()
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met2CF.ALMA |
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met2CF.Ameriflux()
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met2CF.Ameriflux |
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met2CF.AmerifluxLBL()
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met2CF.AmerifluxLBL |
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met2CF.FACE()
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convert FACE files to CF files |
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met2CF.Geostreams()
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Convert geostreams JSON to CF met file |
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met2CF.NARR()
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met2CF.NARR |
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met2CF.PalEON()
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met2CF.PalEON |
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met2CF.PalEONregional() met2CF.PalEONregional()
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met2CF.PalEONregional |
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met2CF.csv()
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met2CF.csv |
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met_temporal_downscale.Gaussian_ensemble()
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met_temporal_downscale.Gaussian_ensemble |
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metgapfill.NOAA_GEFS()
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Gapfill NOAA_GEFS weather data |
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metgapfill()
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Take an Ameriflux NetCDF file
Fill missing met values using MDS approach using MPI-BGC REddyProc library
Currently
Future version: Choose which variables to gap fill
Future version will first downscale and fill with NARR, then REddyProc |
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model.train()
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model.train |
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narr_flx_vars narr_sfc_vars narr_all_vars
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NARR flux and sfc variables |
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nc.merge()
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nc.merge |
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par2ppfd()
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par2ppfd |
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pecan_standard_met_table
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Conversion table for PEcAn standard meteorology |
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permute.nc()
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permute.nc |
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post_process()
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Post process raw NARR downloaded data frame |
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predict_subdaily_met()
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predict_subdaily_met |
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prepare_narr_year()
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Write NetCDF file for a single year of data |
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qair2rh()
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qair2rh |
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read.register()
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read.register |
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read_narr_var()
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Read a specific variable from a NARR NetCDF file |
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rh2qair()
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RH to SH |
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robustly()
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Adverb to try calling a function `n` times before giving up |
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save.betas()
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save.betas |
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save.model()
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save.model |
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site.lst()
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site.lst |
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site_from_tag()
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site_from_tag |
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solarMJ2ppfd()
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MJ to PPFD |
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spin.met()
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Spin-up meteorology |
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split_wind()
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Split wind_speed into eastward_wind and northward_wind |
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step_means()
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take mean at fixed intervals along a vector |
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subdaily_pred()
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subdaily_pred |
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sw2par()
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SW to PAR |
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sw2ppfd()
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SW to PPFD |
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temporal.downscale.functions()
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temporal_downscale_functions |
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upscale_met()
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upscale_met |
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wide2long()
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Wide to Long |